2JVA Hydrolase date Sep 14, 2007
title Nmr Solution Structure Of Peptidyl-Trna Hydrolase Domain Pro Pseudomonas Syringae Pv. Tomato. Northeast Structural Genom Consortium Target Psr211
authors K.K.Singarapu, D.Sukumaran, D.Parish, A.Eletsky, Q.Zhang, L.Zhao, M.Maglaqui, R.Xiao, J.Liu, M.C.Baran, G.V.T.Swapna, Y.J.Huang, T. B.Rost, G.T.Montelione, T.Szyperski, Northeast Structural Geno Consortium (Nesg)
compound source
Molecule: Peptidyl-Trna Hydrolase Domain Protein
Chain: A
Fragment: Residues 1-100
Engineered: Yes
Organism_scientific: Pseudomonas Syringae Pv. Tomato
Organism_taxid: 223283
Strain: Dc3000
Gene: Pspto_1818
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
methodSolution NMR
Gene PSPTO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of the peptidyl-tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide chain release factors., Singarapu KK, Xiao R, Acton T, Rost B, Montelione GT, Szyperski T, Proteins. 2008 May 1;71(2):1027-31. PMID:18247350
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (559 Kb) [Save to disk]
  • Biological Unit Coordinates (2jva.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2JVA
  • Original NMR restraints for 2JVA from PDB
  • Retrieve 2JVA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JVA from S2C, [Save to disk]
  • View 2JVA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JVA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JVA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jva_A] [2jva]
  • SWISS-PROT database: [Q885L4]
  • Domain organization of [Q885L4_PSESM] by SWISSPFAM
  • Other resources with information on 2JVA
  • Community annotation for 2JVA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science