2JVF De Novo Protein date Sep 19, 2007
title Solution Structure Of M7, A Computationally-Designed Artific Protein
authors C.Stordeur, R.Dalluege, O.Birkenmeier, H.Wienk, R.Rudolph, C.Lang C.Luecke
compound source
Molecule: De Novo Protein M7
Chain: A
Engineered: Yes
 Organism_scientific: Unidentified
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a
methodSolution NMR
Primary referenceThe NMR solution structure of the artificial protein M7 matches the computationally designed model., Stordeur C, Dalluge R, Birkenmeier O, Wienk H, Rudolph R, Lange C, Lucke C, Proteins. 2008 Aug 15;72(3):1104-7. PMID:18498106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (518 Kb) [Save to disk]
  • Biological Unit Coordinates (2jvf.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2JVF
  • Original NMR restraints for 2JVF from PDB
  • Retrieve 2JVF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JVF from S2C, [Save to disk]
    • View 2JVF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JVF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JVF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jvf_A] [2jvf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2JVF
  • Community annotation for 2JVF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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