2JWZ Signaling Protein date Oct 31, 2007
title Mutations In The Hydrophobic Core Of Ubiquitin Differentiall Its Recognition By Receptor Proteins
authors A.Haririnia, R.Verma, N.Purohit, M.Twarog, R.Deshaies, D.Bolon, D.
compound source
Molecule: Ubiquitin
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Ubi1, Rpl40a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21 De3(Plyss)
Expression_system_vector_type: Vector
Expression_system_vector: Pet21
methodSolution NMR
Primary referenceMutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins., Haririnia A, Verma R, Purohit N, Twarog MZ, Deshaies RJ, Bolon D, Fushman D, J Mol Biol. 2008 Jan 25;375(4):979-96. Epub 2007 Nov 13. PMID:18054791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (2jwz.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2JWZ
  • Retrieve 2JWZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JWZ from S2C, [Save to disk]
    • View 2JWZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JWZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JWZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jwz] [2jwz_A]
  • SWISS-PROT database: [P61864]
  • Domain organization of [UBIQ_YEAST] by SWISSPFAM
  • Domain found in 2JWZ: [UBQ ] by SMART
    • Other resources with information on 2JWZ
  • Community annotation for 2JWZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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