2JXO Protein Binding date Nov 27, 2007
title Structure Of The Second Pdz Domain Of Nherf-1
authors H.Cheng, J.Li, Z.Dai, Z.Bu, H.Roder
compound source
Molecule: Ezrin-Radixin-Moesin-Binding Phosphoprotein 50
Chain: A
Fragment: Pdz 2 Domain
Synonym: Ebp50, Na+, H+, Exchange Regulatory Cofactor Nhe- 1, Regulatory Cofactor Of Na+, H+, Exchanger, Sodium-Hydro Exchanger Regulatory Factor 1, Solute Carrier Family 9 Isof Regulatory Factor 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slc9a3r1, Nherf
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet 151d-Topopdz2
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAutoinhibitory Interactions between the PDZ2 and C-terminal Domains in the Scaffolding Protein NHERF1., Cheng H, Li J, Fazlieva R, Dai Z, Bu Z, Roder H, Structure. 2009 May 13;17(5):660-9. PMID:19446522
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (302 Kb) [Save to disk]
  • Biological Unit Coordinates (2jxo.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 2JXO
  • Original NMR restraints for 2JXO from PDB
  • Retrieve 2JXO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JXO from S2C, [Save to disk]
    • View 2JXO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JXO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JXO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jxo] [2jxo_A]
  • SWISS-PROT database: [O14745]
  • Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB.
  • Domain organization of [NHRF1_HUMAN] by SWISSPFAM
  • Domain found in 2JXO: [PDZ ] by SMART
    • Other resources with information on 2JXO
  • Community annotation for 2JXO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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