2JY9 Hydrolase date Dec 07, 2007
title Nmr Structure Of Putative Trna Hydrolase Domain From Salmone Typhimurium. Northeast Structural Genomics Consortium Targe
authors K.K.Singarapu, Y.Wu, D.Sukumaran, A.Eletsky, A.Zeri, D.Wang, H.Jan L.Owens, R.Xiao, J.Liu, M.C.Baran, G.V.T.Swapna, T.B.Acton, B.Ros G.T.Montelione, T.Szyperski, Northeast Structural Genomics Co (Nesg)
compound source
Molecule: Putative Trna Hydrolase Domain
Chain: A
Engineered: Yes
 Organism_scientific: Salmonella Typhimurium Lt2
Organism_taxid: 99287
Strain: Lt2 Sgsc1412
Atcc: 700720
Gene: Yaej, Stm0240
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (787 Kb) [Save to disk]
  • Biological Unit Coordinates (2jy9.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 2JY9
  • Original NMR restraints for 2JY9 from PDB
  • Retrieve 2JY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JY9 from S2C, [Save to disk]
    • View 2JY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JY9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JY9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jy9_A] [2jy9]
  • SWISS-PROT database: [Q8ZRN3]
  • Domain organization of [Q8ZRN3_SALTY] by SWISSPFAM
    • Other resources with information on 2JY9
  • Community annotation for 2JY9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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