2JZ3 Transcription Inhibitor Transcription date Dec 27, 2007
title Socs Box Elonginbc Ternary Complex
authors J.J.Babon, J.Sabo, A.Soetopo, S.Yao, M.F.Bailey, J.Zhang, N.A.Nico R.S.Norton
compound source
Molecule: Suppressor Of Cytokine Signaling 3
Chain: A
Fragment: Socs Box, Unp Residues 186-225
Synonym: Socs-3, Cytokine-Inducible Sh2 Protein 3, Cis-3, P 10;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgex-4t

Molecule: Transcription Elongation Factor B Polypeptide 2
Chain: B
Synonym: Elonginb, Rna Polymerase II Transcription Factor S Subunit B, Siii P18, Elongin-B, Elob, Elongin 18 Kda Subuni
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgex-4t

Molecule: Transcription Elongation Factor B Polypeptide 1
Chain: C
Fragment: Unp Residues 17-112
Synonym: Elonginc, Rna Polymerase II Transcription Factor S Subunit C, Siii P15, Elongin-C, Eloc, Elongin 15 Kda Subuni Membrane-Associated Protein Smap1b Homolog;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pbb75eloc
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


B


C


Primary referenceThe SOCS box domain of SOCS3: structure and interaction with the elonginBC-cullin5 ubiquitin ligase., Babon JJ, Sabo JK, Soetopo A, Yao S, Bailey MF, Zhang JG, Nicola NA, Norton RS, J Mol Biol. 2008 Sep 12;381(4):928-40. Epub 2008 Jun 20. PMID:18590740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1200 Kb) [Save to disk]
  • Biological Unit Coordinates (2jz3.pdb1.gz) 61 Kb
  • CSU: Contacts of Structural Units for 2JZ3
  • Original NMR restraints for 2JZ3 from PDB
  • Retrieve 2JZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JZ3 from S2C, [Save to disk]
  • View 2JZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JZ3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JZ3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jz3] [2jz3_A] [2jz3_B] [2jz3_C]
  • SWISS-PROT database: [Q15370] [P83940] [O35718]
  • Domain organization of [ELOB_HUMAN] [ELOC_MOUSE] [SOCS3_MOUSE] by SWISSPFAM
  • Domains found in 2JZ3: [SOCS] [SOCS_box] [Skp1] [UBQ ] by SMART
  • Other resources with information on 2JZ3
  • Community annotation for 2JZ3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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