2K0C Metal Binding Protein date Jan 31, 2008
title Zinc-Finger 2 Of Nup153
authors J.A.Bangert, N.Schrader, I.R.Vetter, R.Stoll
compound source
Molecule: Nuclear Pore Complex Protein Nup153
Chain: A
Fragment: Ranbp2-Type 2 Domain (Unp Residues 703-755)
Synonym: Nucleoporin Nup153, 153 Kda Nucleoporin
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Gene: Nup153
Expression_system: Escherichia Coli
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t1
methodSolution NMR
ligand ZN enzyme
Primary referenceThe Crystal Structure of the Ran-Nup153ZnF2 Complex: a General Ran Docking Site at the Nuclear Pore Complex., Schrader N, Koerner C, Koessmeier K, Bangert JA, Wittinghofer A, Stoll R, Vetter IR, Structure. 2008 Jul;16(7):1116-25. PMID:18611384
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (2k0c.pdb1.gz) 9 Kb
  • LPC: Ligand-Protein Contacts for 2K0C
  • CSU: Contacts of Structural Units for 2K0C
  • Retrieve 2K0C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K0C from S2C, [Save to disk]
    • View 2K0C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K0C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K0C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k0c_A] [2k0c]
  • SWISS-PROT database: [P49791]
  • Domain organization of [NU153_RAT] by SWISSPFAM
  • Domain found in 2K0C: [ZnF_RBZ ] by SMART
    • Other resources with information on 2K0C
  • Community annotation for 2K0C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science