2K1I Antimicrobial Protein date Mar 05, 2008
title Synthesis, Structure And Activities Of An Oral Mucosal Alpha From Rhesus Macaque
authors S.V.Vasudevan, J.Yuan, G.Osapay, P.Tran, K.Tai, M.Selsted, M.J.Coc
compound source
Molecule: Mucosal Alpha-Defensin
Chain: A
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSynthesis, structure, and activities of an oral mucosal alpha-defensin from rhesus macaque., Vasudevan S, Yuan J, Osapay G, Tran P, Tai K, Liang W, Kumar V, Selsted ME, Cocco MJ, J Biol Chem. 2008 Dec 19;283(51):35869-77. Epub 2008 Oct 17. PMID:18930922
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (2k1i.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 2K1I
  • Original NMR restraints for 2K1I from PDB
  • Retrieve 2K1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K1I from S2C, [Save to disk]
    • View 2K1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K1I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K1I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k1i] [2k1i_A]
  • SWISS-PROT database: [B5AKV3]
  • Domain organization of [B5AKV3_MACMU] by SWISSPFAM
  • Domain found in 2K1I: [DEFSN ] by SMART
    • Other resources with information on 2K1I
  • Community annotation for 2K1I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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