2K4D Ligase date Jun 06, 2008
title E2-C-Cbl Recognition Is Necessary But Not Sufficient For Ubiquitination Activity
authors A.Huang, R.N.De Jong, H.Wienk, S.G.Winkler, H.T.M.Timmers, R.Boel
compound source
Molecule: E3 Ubiquitin-Protein Ligase Cbl
Chain: A
Fragment: Ring Domain, Residues 358-437
Synonym: Signal Transduction Protein Cbl, Proto-Oncogene C- Casitas B-Lineage Lymphoma Proto-Oncogene, Ring Finger Prot
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cbl, Cbl2, Rnf55
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Rosetta 2
Expression_system_vector_type: Vector
Expression_system_vector: Plichisgst
methodSolution NMR
ligand ZN enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceE2-c-Cbl recognition is necessary but not sufficient for ubiquitination activity., Huang A, de Jong RN, Wienk H, Winkler GS, Timmers HT, Boelens R, J Mol Biol. 2009 Jan 16;385(2):507-19. Epub 2008 Nov 1. PMID:18996392
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (417 Kb) [Save to disk]
  • Biological Unit Coordinates (2k4d.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 2K4D
  • CSU: Contacts of Structural Units for 2K4D
  • Original NMR restraints for 2K4D from PDB
  • Retrieve 2K4D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K4D from S2C, [Save to disk]
  • View 2K4D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K4D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K4D, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k4d_A] [2k4d]
  • SWISS-PROT database: [P22681]
  • Domain organization of [CBL_HUMAN] by SWISSPFAM
  • Domain found in 2K4D: [RING ] by SMART
  • Other resources with information on 2K4D
  • Community annotation for 2K4D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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