2K4I Structural Protein date Jun 08, 2008
title Solution Structure Of Hiv-2 Myrma Bound To Di-C4-Pi(4,5)P2
authors J.S.Saad, S.D.Ablan, R.H.Ghanam, A.Kim, K.Andrews, K.Nagashima, E. M.F.Summers
compound source
Molecule: Hiv-2 Myristoylated Matrix Protein
Chain: A
Fragment: Unp Residues 2 To 135
Synonym: Matrix Protein P17
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus Type 2
Organism_common: Hiv-2
Organism_taxid: 11720
Strain: Prod10
Gene: Gag-Pol
Expression_system: Escherichia Coli
Expression_system_vector: Pet 11 And 19
methodSolution NMR
ligand MYR, PBU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the Myristylated Human Immunodeficiency Virus Type 2 Matrix Protein and the Role of Phosphatidylinositol-(4,5)-Bisphosphate in Membrane Targeting., Saad JS, Ablan SD, Ghanam RH, Kim A, Andrews K, Nagashima K, Soheilian F, Freed EO, Summers MF, J Mol Biol. 2008 Jul 16. PMID:18657545
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (873 Kb) [Save to disk]
  • Biological Unit Coordinates (2k4i.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2K4I
  • CSU: Contacts of Structural Units for 2K4I
  • Original NMR restraints for 2K4I from PDB
  • Retrieve 2K4I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K4I from S2C, [Save to disk]
    • View 2K4I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K4I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K4I, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k4i_A] [2k4i]
  • SWISS-PROT database: [P04584]
  • Domain organization of [POL_HV2RO] by SWISSPFAM
    • Other resources with information on 2K4I
  • Community annotation for 2K4I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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