2K5U Signaling Protein date Jun 30, 2008
title Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp-
authors J.Prestegard, Y.Liu
compound source
Molecule: Adp-Ribosylation Factor 1
Chain: A
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Rat
Organism_taxid: 4932
Gene: Arf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet20(B)
methodSolution NMR
ligand GDP, MYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and Membrane Interaction of Myristoylated ARF1., Liu Y, Kahn RA, Prestegard JH, Structure. 2009 Jan;17(1):79-87. PMID:19141284
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (793 Kb) [Save to disk]
  • Biological Unit Coordinates (2k5u.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2K5U
  • CSU: Contacts of Structural Units for 2K5U
  • Original NMR restraints for 2K5U from PDB
  • Retrieve 2K5U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K5U from S2C, [Save to disk]
  • View 2K5U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K5U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K5U, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k5u_A] [2k5u]
  • SWISS-PROT database: [P11076]
  • Domain organization of [ARF1_YEAST] by SWISSPFAM
  • Domain found in 2K5U: [ARF ] by SMART
  • Other resources with information on 2K5U
  • Community annotation for 2K5U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science