2K6B Apoptosis date Jul 07, 2008
title Solution Structure Of 1-112 Fragment Of Human Programmed Cel Protein
authors Y.Feng, H.Yao, D.Liu, J.Wang
compound source
Molecule: Programmed Cell Death Protein 5
Chain: A
Fragment: Unp Residues 2-112
Synonym: Tf-1 Cell Apoptosis-Related Protein 19, Protein Tf
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdcd5, Tfar19
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet-3d-Hr52
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-function correlation of human programmed cell death 5 protein., Yao H, Xu L, Feng Y, Liu D, Chen Y, Wang J, Arch Biochem Biophys. 2009 Jun 15;486(2):141-9. Epub 2009 Apr 7. PMID:19358820
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (604 Kb) [Save to disk]
  • Biological Unit Coordinates (2k6b.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2K6B
  • Original NMR restraints for 2K6B from PDB
  • Retrieve 2K6B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K6B from S2C, [Save to disk]
    • View 2K6B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K6B
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K6B, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k6b] [2k6b_A]
  • SWISS-PROT database: [O14737]
  • Domain organization of [PDCD5_HUMAN] by SWISSPFAM
    • Other resources with information on 2K6B
  • Community annotation for 2K6B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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