2K6Q Apoptosis Inhibitor Apoptosis date Jul 17, 2008
title Lc3 P62 Complex Structure
authors N.Noda, H.Kumeta, H.Nakatogawa, K.Satoo, W.Adachi, J.Ishii, Y.Fuji Y.Ohsumi, F.Inagaki
compound source
Molecule: Microtubule-Associated Proteins 1a1b Light Chain
Chain: A
Synonym: Lc3, Microtubule-Associated Protein 1 Light Chain Map1a1b Light Chain 3 B, Map1amap1b Lc3 B, Map1 Light Cha Protein 2, Autophagy-Related Protein Lc3 B, Autophagy-Relat Ubiquitin-Like Modifier Lc3 B;
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Map1lc3b, Map1alc3, Map1lc3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgex6p

Molecule: P62_peptide From Sequestosome-1
Chain: B
Synonym: Ubiquitin-Binding Protein P62, Protein Kinase C-Ze Interacting Protein, Pkc-Zeta-Interacting Protein;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pgex6p
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (853 Kb) [Save to disk]
  • Biological Unit Coordinates (2k6q.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 2K6Q
  • Original NMR restraints for 2K6Q from PDB
  • Retrieve 2K6Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K6Q from S2C, [Save to disk]
    • View 2K6Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K6Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K6Q, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k6q_B] [2k6q_A] [2k6q]
  • SWISS-PROT database: [Q62625] [O08623]
  • Domain organization of [MLP3B_RAT] [SQSTM_RAT] by SWISSPFAM
    • Other resources with information on 2K6Q
  • Community annotation for 2K6Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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