2K7Y Viral Protein date Aug 28, 2008
title Solution Fold Of Hiv-1 Virus Protein U Cytoplasmic Domain In Presence Of Dpc Micelles
authors M.Wittlich, B.W.Koenig, D.Willbold
compound source
Molecule: Protein Vpu
Chain: A
Fragment: Vpu Cytoplasmic Domain
Synonym: Viral Protein U, U Orf Protein
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus Type 1
Organism_common: Hiv-1
Organism_taxid: 11691
Strain: Hv1s1
Gene: Vpu
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_vector: Pgex-2t
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structural characterization of HIV-1 virus protein U cytoplasmic domain in the presence of dodecylphosphatidylcholine micelles., Wittlich M, Koenig BW, Stoldt M, Schmidt H, Willbold D, FEBS J. 2009 Oct 5. PMID:19804408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (225 Kb) [Save to disk]
  • Biological Unit Coordinates (2k7y.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 2K7Y
  • Original NMR restraints for 2K7Y from PDB
  • Retrieve 2K7Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K7Y from S2C, [Save to disk]
    • View 2K7Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K7Y
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K7Y, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k7y_A] [2k7y]
  • SWISS-PROT database: [P19554]
  • Domain organization of [VPU_HV1S1] by SWISSPFAM
    • Other resources with information on 2K7Y
  • Community annotation for 2K7Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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