2K8C	Protein Binding	date	Sep 04, 2008
title	Solution Structure Of Plaa Family Ubiquitin Binding Domain ( Trans Isomer In Complex With Ubiquitin
authors	Q.S.Fu, C.J.Zhou, H.C.Gao, D.H.Lin, H.Y.Hu
compound		source
Molecule: Ubiquitin Chain: A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rps27a, Uba80, Ubcep1, Uba52, Ubcep2, Ubb, Ubc Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector: Pet-22b
Molecule: Phospholipase A-2-Activating Protein Chain: B Fragment: Unp Residues 386-465 Synonym: Pla2p, Plap Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Plaa, Plap Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector: Pet-32m
method	Solution NMR
Gene Ontology	Chain Function Process Component B
Primary reference	Structural Basis for Ubiquitin Recognition by a Novel Domain from Human Phospholipase A2-activating Protein., Fu QS, Zhou CJ, Gao HC, Jiang YJ, Zhou ZR, Hong J, Yao WM, Song AX, Lin DH, Hu HY, J Biol Chem. 2009 Jul 10;284(28):19043-52. Epub 2009 May 7. PMID:19423704

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (465 Kb) [Save to disk] Biological Unit Coordinates (2k8c.pdb1.gz) 46 Kb CSU: Contacts of Structural Units for 2K8C Original NMR restraints for 2K8C from PDB Retrieve 2K8C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2K8C from S2C, [Save to disk]

View 2K8C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2K8C

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2K8C, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2k8c_A] [2k8c] [2k8c_B] SWISS-PROT database: [Q9Y263] [P62988] Domain organization of [PLAP_HUMAN] [UBIQ_HUMAN] by SWISSPFAM Domain found in 2K8C: [UBQ ] by SMART

Other resources with information on 2K8C

Community annotation for 2K8C at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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