2K9J Membrane Protein date Oct 15, 2008
title Integrin Alphaiib-Beta3 Transmembrane Complex
authors T.Lau, C.Kim, M.H.Ginsberg, T.S.Ulmer
compound source
Molecule: Integrin Alpha-Iib Light Chain
Chain: A
Fragment: Transmembrane Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itga2b, Gp2b, Itgab
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet44-Gb3-Aiib,Tm

Molecule: Integrin Beta-3
Chain: B
Fragment: Transmembrane Domain
Synonym: Platelet Membrane Glycoprotein Iiia, Gpiiia, Cd61
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Itgb3, Gp3a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet44-Ksi-B3tm
methodSolution NMR
note 2K9J (Molecule of the Month:pdb134)
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceThe structure of the integrin alphaIIbbeta3 transmembrane complex explains integrin transmembrane signalling., Lau TL, Kim C, Ginsberg MH, Ulmer TS, EMBO J. 2009 Mar 12. PMID:19279667
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (506 Kb) [Save to disk]
  • Biological Unit Coordinates (2k9j.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2K9J
  • Original NMR restraints for 2K9J from PDB
  • Retrieve 2K9J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K9J from S2C, [Save to disk]
  • View 2K9J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2K9J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K9J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k9j_B] [2k9j] [2k9j_A]
  • SWISS-PROT database: [P08514] [P05106]
  • Domain organization of [ITA2B_HUMAN] [ITB3_HUMAN] by SWISSPFAM
  • Other resources with information on 2K9J
  • Community annotation for 2K9J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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