2K9P Membrane Protein date Oct 21, 2008
title Structure Of Tm1_tm2 In Lppg Micelles
authors N.Neumoin, O.Zerbe, F.Naider
compound source
Molecule: Pheromone Alpha Factor Receptor
Chain: A
Fragment: Tm1-Tm2
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Ste2, Yfl026w
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Ai (Arabinose Induced)
Expression_system_vector_type: Plasmid
Expression_system_vector: Plc01
Other_details: Arabinose-Induced E.Coli Vector, Protein Enc The Delta-Trp Fusion, Cleaved By Cnbr Cleavage
methodSolution NMR
note 2K9P is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a double transmembrane fragment of a G-protein-coupled receptor in micelles., Neumoin A, Cohen LS, Arshava B, Tantry S, Becker JM, Zerbe O, Naider F, Biophys J. 2009 Apr 22;96(8):3187-96. PMID:19383463
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (414 Kb) [Save to disk]
  • Biological Unit Coordinates (2k9p.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2K9P
  • Original NMR restraints for 2K9P from PDB
  • Retrieve 2K9P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2K9P from S2C, [Save to disk]
    • View 2K9P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2K9P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2K9P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2k9p] [2k9p_A]
  • SWISS-PROT database: [P06842]
  • Domain organization of [STE2_YEAST] by SWISSPFAM
    • Other resources with information on 2K9P
  • Community annotation for 2K9P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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