2KA0 Structural Genomics, Unknown Function date Oct 27, 2008
title Nmr Structure Of The Protein Tm1367
authors B.Mohanty, B.Pedrini, P.Serrano, M.Geralt, R.Horst, T.Herrmann, I. K.Wuthrich, Joint Center For Structural Genomics (Jcsg)
compound source
Molecule: Uncharacterized Protein Tm1367
Chain: A
Engineered: Yes
 Organism_scientific: Thermotoga Maritima
Organism_taxid: 2336
Gene: Tm_1367
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosseta De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet25b
methodSolution NMR
Gene TM
Primary referenceComparison of NMR and crystal structures for the proteins TM1112 and TM1367., Mohanty B, Serrano P, Pedrini B, Jaudzems K, Geralt M, Horst R, Herrmann T, Elsliger MA, Wilson IA, Wuthrich K, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Oct 1;66(Pt, 10):1381-92. Epub 2010 Aug 7. PMID:20944235
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (636 Kb) [Save to disk]
  • Biological Unit Coordinates (2ka0.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 2KA0
  • Original NMR restraints for 2KA0 from PDB
  • Retrieve 2KA0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KA0 from S2C, [Save to disk]
    • View 2KA0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KA0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KA0, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ka0_A] [2ka0]
  • SWISS-PROT database: [Q9X187]
  • Domain organization of [Q9X187_THEMA] by SWISSPFAM
    • Other resources with information on 2KA0
  • Community annotation for 2KA0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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