2KDP Transcription date Jan 14, 2009
title Solution Structure Of The Sap30 Zinc Finger Motif
authors Y.He, R.Imhoff, A.Sahu, I.Radhakrishnan
compound source
Molecule: Histone Deacetylase Complex Subunit Sap30
Chain: A
Synonym: Sin3-Associated Polypeptide, 30 Kda, Sin3 Corepres Complex Subunit Sap30;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sap30
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pmcsg7
methodSolution NMR
ligand ZN enzyme
note 2KDP is a representative structure
Primary referenceSolution structure of a novel zinc finger motif in the SAP30 polypeptide of the Sin3 corepressor complex and its potential role in nucleic acid recognition., He Y, Imhoff R, Sahu A, Radhakrishnan I, Nucleic Acids Res. 2009 Feb 17. PMID:19223330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (907 Kb) [Save to disk]
  • Biological Unit Coordinates (2kdp.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2KDP
  • CSU: Contacts of Structural Units for 2KDP
  • Original NMR restraints for 2KDP from PDB
  • Retrieve 2KDP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KDP from S2C, [Save to disk]
    • View 2KDP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KDP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KDP, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kdp_A] [2kdp]
  • SWISS-PROT database: [O75446]
  • Domain organization of [SAP30_HUMAN] by SWISSPFAM
    • Other resources with information on 2KDP
  • Community annotation for 2KDP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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