2KFJ Signaling Protein date Feb 22, 2009
title Solution Structure Of The Loop Deletion Mutant Of Pb1 Domain
authors K.Ogura, T.Tandai, S.Yoshinaga, Y.Kobashigawa, H.Kumeta, F.Inagak
compound source
Molecule: Cell Division Control Protein 24
Chain: A
Fragment: Pb1 Domain
Synonym: Calcium Regulatory Protein
Engineered: Yes
Mutation: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Cdc24, Cls4, Yal041w
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgex-6p
methodSolution NMR
Primary referenceNMR structure of the heterodimer of Bem1 and Cdc24 PB1 domains from Saccharomyces cerevisiae., Ogura K, Tandai T, Yoshinaga S, Kobashigawa Y, Kumeta H, Ito T, Sumimoto H, Inagaki F, J Biochem. 2009 Sep;146(3):317-25. Epub 2009 May 18. PMID:19451149
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (550 Kb) [Save to disk]
  • Biological Unit Coordinates (2kfj.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2KFJ
  • Original NMR restraints for 2KFJ from PDB
  • Retrieve 2KFJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KFJ from S2C, [Save to disk]
    • View 2KFJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KFJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KFJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kfj_A] [2kfj]
  • SWISS-PROT database: [P11433]
  • Domain organization of [CDC24_YEAST] by SWISSPFAM
  • Domain found in 2KFJ: [PB1 ] by SMART
    • Other resources with information on 2KFJ
  • Community annotation for 2KFJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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