2KGJ Isomerase date Mar 12, 2009
title Solution Structure Of Parvulin Domain Of Ppid From E.Coli
authors U.Weininger, R.P.Jakob
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase D
Chain: A
Fragment: Unp Residues 264-357
Synonym: Ppiase D, Rotamase D
Ec: 5.2.1.8
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Ppid, Ybau, B0441, Jw0431
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Pet 11a
methodSolution NMR
ligand
enzyme Isomerase E.C.5.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe prolyl isomerase domain of PpiD from Escherichia coli shows a parvulin fold but is devoid of catalytic activity., Weininger U, Jakob RP, Kovermann M, Balbach J, Schmid FX, Protein Sci. 2010 Jan;19(1):6-18. PMID:19866485
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (2kgj.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 2KGJ
  • Original NMR restraints for 2KGJ from PDB
  • Retrieve 2KGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KGJ from S2C, [Save to disk]
    • View 2KGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KGJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KGJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kgj_A] [2kgj]
  • SWISS-PROT database: [P0ADY1]
  • Domain organization of [PPID_ECOLI] by SWISSPFAM
    • Other resources with information on 2KGJ
  • Community annotation for 2KGJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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