2KHW Transferase Protein Binding date Apr 13, 2009
title Solution Structure Of The Human Polymerase Iota Ubm2-Ubiquit
authors M.G.Bomar, S.D'Souza, M.Bienko, I.Dikic, G.Walker
compound source
Molecule: Immunoglobulin G-Binding Protein G, Dna Polymeras
Chain: A
Fragment: Unp Residues 304-357, 676-715
Synonym: Igg-Binding Protein G, Rad30 Homolog B, Eta2
Ec: 2.7.7.7
Engineered: Yes
 Organism_scientific: Streptococcus Sp., Homo Sapiens
Organism_taxid: 1320, 9606
Gene: Spg, Poli, Rad30b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet30-Gb1-Fusion

Molecule: Ubiquitin
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps27a, Uba80, Ubcep1, Uba52, Ubcep2, Ubb, Ubc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector: Pet15b
methodSolution NMR
ligand
enzyme Transferase E.C.2.7.7.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (730 Kb) [Save to disk]
  • Biological Unit Coordinates (2khw.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2KHW
  • Original NMR restraints for 2KHW from PDB
  • Retrieve 2KHW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KHW from S2C, [Save to disk]
    • View 2KHW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KHW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KHW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2khw] [2khw_B] [2khw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KHW: [UBQ ] by SMART
    • Other resources with information on 2KHW
  • Community annotation for 2KHW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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