2KI2 Rna Binding Protein Ss-Dna Binding Prote date Apr 20, 2009
title Solution Structure Of Ss-Dna Binding Protein 12rnp2 Precurso Hp0827(O25501_helpy) Form Helicobacter Pylori
authors C.Ma, J.Lee, J.Kim, S.Park, A.Kwon, B.Lee
compound source
Molecule: Ss-Dna Binding Protein 12rnp2
Chain: A
Engineered: Yes
 Organism_scientific: Helicobacter Pylori
Organism_common: Campylobacter Pylori
Organism_taxid: 210
Gene: Hp_0827
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21a(+)
methodSolution NMR
Gene HP
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR Solution Structure of HP0827 (O25501_HELPY) from Helicobacter pylori: Model of the possible RNA Binding Site., Jang SB, Ma C, Lee JY, Kim JH, Park SJ, Kwon AR, Lee BJ, J Biochem. 2009 Jul 15. PMID:19605462
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (417 Kb) [Save to disk]
  • Biological Unit Coordinates (2ki2.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 2KI2
  • Original NMR restraints for 2KI2 from PDB
  • Retrieve 2KI2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KI2 from S2C, [Save to disk]
    • View 2KI2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KI2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KI2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ki2] [2ki2_A]
  • SWISS-PROT database: [O25501]
  • Domain organization of [O25501_HELPY] by SWISSPFAM
  • Domain found in 2KI2: [RRM ] by SMART
    • Other resources with information on 2KI2
  • Community annotation for 2KI2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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