2KJD Signaling Protein date May 27, 2009
title Solution Structure Of Extended Pdz2 Domain From Nherf1 (150-
authors S.Bhattacharya, D.Cowburn, Z.Bu
compound source
Molecule: Sodiumhydrogen Exchange Regulatory Cofactor Nhe-
Chain: A
Fragment: Extended Pdz2 Domain: Unp Residues 150-270
Synonym: Nherf-1, Ezrin-Radixin-Moesin-Binding Phosphoprote Ebp50, Regulatory Cofactor Of Na(+)H(+) Exchanger, Sodium- Exchanger Regulatory Factor 1, Solute Carrier Family 9 Isof Regulatory Factor 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slc9a3r1, Nherf, Nherf1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet151d-Topo
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (745 Kb) [Save to disk]
  • Biological Unit Coordinates (2kjd.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 2KJD
  • Original NMR restraints for 2KJD from PDB
  • Retrieve 2KJD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KJD from S2C, [Save to disk]
    • View 2KJD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KJD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KJD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kjd] [2kjd_A]
  • SWISS-PROT database: [O14745]
  • Belongs to the ezrin/radixin/moesin-binding phosphoprotein 50 (ebp50) family according to TCDB.
  • Domain organization of [NHRF1_HUMAN] by SWISSPFAM
  • Domain found in 2KJD: [PDZ ] by SMART
    • Other resources with information on 2KJD
  • Community annotation for 2KJD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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