2KJH Ligase Protein Binding date May 28, 2009
title Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
authors S.A.Serniwka, G.S.Shaw
compound source
Molecule: Ubiquitinisg15-Conjugating Enzyme E2 L6
Chain: A
Synonym: Ubiquitin-Protein Ligase L6, Ubiquitin Carrier Pro Ubch8, Retinoic Acid-Induced Gene B Protein, Rig-B;
Ec: 6.3.2.19
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ube2l6, Ubch8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector: P11

Molecule: Ubiquitin
Chain: B
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps27a Uba80, Ubcep1, Uba52, Ubb, Ubc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector: Pet3a
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structure of the UbcH8-Ubiquitin Complex Shows a Unique Ubiquitin Interaction Site., Serniwka SA, Shaw GS, Biochemistry. 2009 Dec 4. PMID:19928833
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (592 Kb) [Save to disk]
  • Biological Unit Coordinates (2kjh.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 2KJH
  • Original NMR restraints for 2KJH from PDB
  • Retrieve 2KJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KJH from S2C, [Save to disk]
    • View 2KJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KJH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KJH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kjh] [2kjh_A] [2kjh_B]
  • SWISS-PROT database: [O14933] [P62988]
  • Domain organization of [UB2L6_HUMAN] [UBIQ_HUMAN] by SWISSPFAM
  • Domains found in 2KJH: [UBCc] [UBQ ] by SMART
    • Other resources with information on 2KJH
  • Community annotation for 2KJH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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