2KKD Electron Transport date Jun 18, 2009
title Nmr Structure Of Ni Substitued Desulfovibrio Vulgaris Rubred
authors S.G.Nunes, B.F.Volkman, J.J.G.Moura, I.Moura, A.L.Macedo, J.L.Mar I.C.Duarte
compound source
Molecule: Rubredoxin
Chain: A
Synonym: Rd
Engineered: Yes
Organism_scientific: Desulfovibrio Vulgaris Str. Hildenboro
Organism_taxid: 882
Strain: Hidenboroughatcc 29579ncimb 8303
Gene: Rub, Dvu_3184
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pt7-7
methodSolution NMR
ligand NI enzyme
note 2KKD supersedes 2QKZ
Gene DVU
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceAn NMR structural study of nickel-substituted rubredoxin., Goodfellow BJ, Duarte IC, Macedo AL, Volkman BF, Nunes SG, Moura I, Markley JL, Moura JJ, J Biol Inorg Chem. 2009 Dec 8. PMID:19997764
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (2kkd.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2KKD
  • CSU: Contacts of Structural Units for 2KKD
  • Original NMR restraints for 2KKD from PDB
  • Retrieve 2KKD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KKD from S2C, [Save to disk]
  • View 2KKD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KKD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KKD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kkd] [2kkd_A]
  • SWISS-PROT database: [P00269]
  • Domain organization of [RUBR_DESVH] by SWISSPFAM
  • Other resources with information on 2KKD
  • Community annotation for 2KKD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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