2KNA Apoptosis date Aug 20, 2009
title Solution Structure Of Uba Domain Of Xiap
authors S.K.Hui, M.K.Tse, K.H.Sze
compound source
Molecule: Baculoviral Iap Repeat-Containing Protein 4
Chain: A
Fragment: Uba Domain, Residues In Unp 357-449
Synonym: E3 Ubiquitin-Protein Ligase Xiap, Inhibitor Of Apo Protein 3, X-Linked Inhibitor Of Apoptosis Protein, X-Linke Iap-Like Protein, Hilp;
Ec: 6.3.2.-
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Xiap, Api3, Birc4, Iap3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet-32a
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Primary referenceBackbone and side-chain 1H, 13C and 15N assignments of the ubiquitin-associated domain of human X-linked inhibitor of apoptosis protein., Hui SK, Tse MK, Yang Y, Wong BC, Sze KH, Biomol NMR Assign. 2010 Apr;4(1):13-5. Epub 2009 Nov 15. PMID:19916060
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (420 Kb) [Save to disk]
  • Biological Unit Coordinates (2kna.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2KNA
  • Original NMR restraints for 2KNA from PDB
  • Retrieve 2KNA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KNA from S2C, [Save to disk]
    • View 2KNA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KNA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KNA, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kna_A] [2kna]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KNA
  • Community annotation for 2KNA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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