2KNU Membrane Protein date Sep 04, 2009
title Solution Structure Of The Transmembrane Proximal Region Of T C Virus E1 Glycoprotein
authors R.Spadaccini, G.D'Errico, V.D'Alessio, E.Notomista, A.Bianchi, M. D.Picone
compound source
Molecule: Genome Polyprotein
Chain: A
Fragment: Unp Residues 138-166
Synonym: E1_peptide
Engineered: Yes
Synthetic: Yes
Organism_scientific: Hepatitis C Virus
Organism_taxid: 11103
Other_details: Peptide Synthesis
methodSolution NMR
note 2KNU is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural characterization of the transmembrane proximal region of the hepatitis C virus E1 glycoprotein., Spadaccini R, D'Errico G, D'Alessio V, Notomista E, Bianchi A, Merola M, Picone D, Biochim Biophys Acta. 2009 Nov 3. PMID:19891955
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2knu.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 2KNU
  • Original NMR restraints for 2KNU from PDB
  • Retrieve 2KNU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KNU from S2C, [Save to disk]
  • View 2KNU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KNU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KNU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2knu_A] [2knu]
  • SWISS-PROT database: [Q03463]
  • Domain organization of [POLG_HCVJ1] by SWISSPFAM
  • Other resources with information on 2KNU
  • Community annotation for 2KNU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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