2KNZ Protein Binding date Sep 08, 2009
title Nmr Structure Of Cip75 Uba Domain
authors F.Kieken, G.Spagnol, V.Su, A.F.Lau, P.L.Sorgen
compound source
Molecule: Ubiquilin-4
Chain: A
Fragment: Uba Domain, Residues 549-596
Synonym: Ataxin-1 Ubiquitin-Like-Interacting Protein A1u
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ubqln4, Ubin
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-2
methodSolution NMR
Primary referenceNMR structure note: UBA domain of CIP75., Kieken F, Spagnol G, Su V, Lau AF, Sorgen PL, J Biomol NMR. 2010 Mar;46(3):245-50. Epub 2010 Feb 3. PMID:20127391
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (2knz.pdb1.gz) 15 Kb
  • CSU: Contacts of Structural Units for 2KNZ
  • Original NMR restraints for 2KNZ from PDB
  • Retrieve 2KNZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KNZ from S2C, [Save to disk]
    • View 2KNZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KNZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KNZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2knz_A] [2knz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KNZ: [UBA ] by SMART
    • Other resources with information on 2KNZ
  • Community annotation for 2KNZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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