2KOG Membrane Protein date Sep 22, 2009
title Lipid-Bound Synaptobrevin Solution Nmr Structure
authors J.F.Ellena, B.Liang, M.Wiktor, A.Stein, D.S.Cafiso, R.Jahn, L.K.Ta
compound source
Molecule: Vesicle-Associated Membrane Protein 2
Chain: A
Synonym: Vamp-2, Synaptobrevin-2
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Vamp2, Syb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet28a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDynamic structure of lipid-bound synaptobrevin suggests a nucleation-propagation mechanism for trans-SNARE complex formation., Ellena JF, Liang B, Wiktor M, Stein A, Cafiso DS, Jahn R, Tamm LK, Proc Natl Acad Sci U S A. 2009 Nov 16. PMID:19918058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (613 Kb) [Save to disk]
  • Biological Unit Coordinates (2kog.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2KOG
  • Original NMR restraints for 2KOG from PDB
  • Retrieve 2KOG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KOG from S2C, [Save to disk]
    • View 2KOG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KOG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KOG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kog] [2kog_A]
  • SWISS-PROT database: [P63045]
  • Domain organization of [VAMP2_RAT] by SWISSPFAM
    • Other resources with information on 2KOG
  • Community annotation for 2KOG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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