2KQ0 Ligase date Oct 23, 2009
title Human Nedd4 3rd Ww Domain Complex With Ebola Zaire Virus Mat Protein Vp40 Derived Peptide Ilptappeymea
authors M.Iglesias-Bexiga, M.Macias, R.Bonet, F.J.Blanco, E.S.Cobos, I.Lu
compound source
Molecule: E3 Ubiquitin-Protein Ligase Nedd4
Chain: A
Fragment: 3rd Ww Domain, Unp Residues 834-878
Synonym: Neural Precursor Cell Expressed Developmentally Do Regulated Protein 4, Nedd-4, Cell Proliferation-Inducing Ge Protein;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nedd4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_variant: Bl21(De3)
Expression_system_vector_type: Vector
Expression_system_vector: Petm11

Molecule: 12-Mer From Matrix Protein Vp40
Chain: B
Fragment: Unp Residues 5-16
Synonym: Membrane-Associated Protein Vp40
Engineered: Yes

Synthetic: Yes
Organism_scientific: Human T-Cell Lymphotrophic Virus Type Mel 15;
Organism_common: Htlv-1
Organism_taxid: 402046
Other_details: Chemical Synthesis
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (244 Kb) [Save to disk]
  • Biological Unit Coordinates (2kq0.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2KQ0
  • Original NMR restraints for 2KQ0 from PDB
  • Retrieve 2KQ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KQ0 from S2C, [Save to disk]
  • View 2KQ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KQ0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KQ0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kq0_B] [2kq0_A] [2kq0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KQ0: [WW ] by SMART
  • Other resources with information on 2KQ0
  • Community annotation for 2KQ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science