2KRE Protein Binding date Dec 16, 2009
title Solution Structure Of E4bufd2a U-Box Domain
authors Y.Nomine, E.Wasielewski, M.Botuyan, G.Mer
compound source
Molecule: Ubiquitin Conjugation Factor E4 B
Chain: A
Fragment: Unp Residues 1208-1302
Synonym: Ubiquitin Fusion Degradation Protein 2, Homozygous In Neuroblastoma 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hdnb1, Kiaa0684, Ube4b, Ufd2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet15b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular basis for the association of human E4B U box ubiquitin ligase with E2-conjugating enzymes UbcH5c and Ubc4., Benirschke RC, Thompson JR, Nomine Y, Wasielewski E, Juranic N, Macura S, Hatakeyama S, Nakayama KI, Botuyan MV, Mer G, Structure. 2010 Aug 11;18(8):955-65. PMID:20696396
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (538 Kb) [Save to disk]
  • Biological Unit Coordinates (2kre.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 2KRE
  • Original NMR restraints for 2KRE from PDB
  • Retrieve 2KRE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KRE from S2C, [Save to disk]
  • View 2KRE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KRE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KRE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kre_A] [2kre]
  • SWISS-PROT database: [O95155]
  • Domain organization of [UBE4B_HUMAN] by SWISSPFAM
  • Domain found in 2KRE: [Ubox ] by SMART
  • Other resources with information on 2KRE
  • Community annotation for 2KRE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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