2KSJ Viral Protein date Jan 05, 2010
title Structure And Dynamics Of The Membrane-Bound Form Of Pf1 Coa Implications For Structural Rearrangement During Virus Asse
authors S.Park, F.Marassi, D.Black, S.J.Opella
compound source
Molecule: Capsid Protein G8p
Chain: A
Fragment: Unp Residues 37-82
Synonym: Gene 8 Protein, G8p, Coat Protein B, Major Coat Pr
Engineered: Yes
 Organism_scientific: Pseudomonas Phage Pf1
Organism_common: Bacteriophage Pf1
Organism_taxid: 10871
Gene: Viii
methodSolution NMR; Solid-State Nmr
Primary referenceStructure and dynamics of the membrane-bound form of Pf1 coat protein: implications of structural rearrangement for virus assembly., Park SH, Marassi FM, Black D, Opella SJ, Biophys J. 2010 Sep 8;99(5):1465-74. PMID:20816058
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (2ksj.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 2KSJ
  • Original NMR restraints for 2KSJ from PDB
  • Retrieve 2KSJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KSJ from S2C, [Save to disk]
    • View 2KSJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KSJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KSJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ksj_A] [2ksj]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2KSJ
  • Community annotation for 2KSJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
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