2KSQ Transport Protein date Jan 12, 2010
title The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conf
authors Y.Liu, R.Kahn, J.Prestegard
compound source
Molecule: Adp-Ribosylation Factor 1
Chain: A
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Yeast
Organism_taxid: 4932
Gene: Arf1, Ydl192w, D1244
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet20(B)
methodSolution NMR
ligand GTP, MTN, MYR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDynamic structure of membrane-anchored Arf*GTP., Liu Y, Kahn RA, Prestegard JH, Nat Struct Mol Biol. 2010 Jul;17(7):876-81. Epub 2010 Jul 4. PMID:20601958
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1114 Kb) [Save to disk]
  • Biological Unit Coordinates (2ksq.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2KSQ
  • CSU: Contacts of Structural Units for 2KSQ
  • Original NMR restraints for 2KSQ from PDB
  • Retrieve 2KSQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KSQ from S2C, [Save to disk]
    • View 2KSQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2KSQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KSQ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ksq_A] [2ksq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2KSQ: [ARF] [small_GTPase ] by SMART
    • Other resources with information on 2KSQ
  • Community annotation for 2KSQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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