2KWV Protein Binding Signaling Protein date Apr 20, 2010
title Solution Structure Of Ubm1 Of Murine Polymerase Iota In Comp Ubiquitin
authors D.Burschowsky, F.Rudolf, G.Rabut, T.Herrmann, M.Peter, G.Wider
compound source
Molecule: Dna Polymerase Iota
Chain: A
Fragment: C-Terminal Ubiquitin-Binding Motif (Unp Residues
Synonym: Rad30 Homolog B
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Poli, Rad30b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star De3
Expression_system_vector: Pgex-4t-2

Molecule: Ubiquitin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps27a, Uba80, Ubcep1, Uba52, Ubcep2, Ubb, Ubc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Star De3
Expression_system_vector: Pet-19b
methodSolution NMR
note 2KWV is a representative structure
Primary referenceStructural Analysis of the Conserved Ubiquitin-binding Motifs (UBMs) of the Translesion Polymerase iota in Complex with Ubiquitin., Burschowsky D, Rudolf F, Rabut G, Herrmann T, Matthias P, Wider G, J Biol Chem. 2011 Jan 14;286(2):1364-73. Epub 2010 Oct 6. PMID:20929865
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (584 Kb) [Save to disk]
  • Biological Unit Coordinates (2kwv.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 2KWV
  • Original NMR restraints for 2KWV from PDB
  • Retrieve 2KWV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2KWV from S2C, [Save to disk]
  • View 2KWV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2KWV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2KWV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2kwv] [2kwv_A] [2kwv_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2KWV: [UBQ ] by SMART
  • Other resources with information on 2KWV
  • Community annotation for 2KWV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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