2L1C Cell Adhesion date Jul 27, 2010
title Shc-Ptb:Biphosphorylated Integrin Beta3 Cytoplasmic Tail Com
authors L.Deshmukh, V.Gorbatyuk, O.Vinogradova
compound source
Molecule: Shc (Src Homology 2 Domain Containing) Transformi 1, Isoform Cra_d;
Chain: A
Fragment: Ptb Domain (Unp Residues 17-207)
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Shc1, Hcg_1997126
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Pet15b

Molecule: Integrin Beta-3
Chain: B
Fragment: Unp Residues 762-788
Synonym: Platelet Membrane Glycoprotein Iiia, Gpiiia
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized Based Sequence Of The Human Integrin Beta3 Cytoplasmic Tail (Repr Residues 736r-762g)
methodSolution NMR
ligand PTR enzyme
note 2L1C is a representative structure
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIntegrin beta3 phosphorylation dictates its complex with Shc PTB domain., Deshmukh L, Gorbatyuk V, Vinogradova O, J Biol Chem. 2010 Aug 25. PMID:20739287
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1000 Kb) [Save to disk]
  • Biological Unit Coordinates (2l1c.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2L1C
  • CSU: Contacts of Structural Units for 2L1C
  • Original NMR restraints for 2L1C from PDB
  • Retrieve 2L1C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L1C from S2C, [Save to disk]
    • View 2L1C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L1C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L1C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l1c_A] [2l1c] [2l1c_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2L1C: [Integrin_b_cyt] [PTB ] by SMART
    • Other resources with information on 2L1C
  • Community annotation for 2L1C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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