2L1G Transcription Dna date Jul 28, 2010
title Rdc Refined Solution Structure Of The Thap Zinc Finger Of Th Complex With Its 16bp Rrm1 Dna Target
authors S.Campagne, V.Gervais, O.Saurel, A.Milon
compound source
Molecule: Thap Domain-Containing Protein 1
Chain: A
Fragment: Zinc Finger Domain
Synonym: Rrm1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21
Expression_system_variant: De3
Expression_system_vector: Pet26

Molecule: Dna (5'-D(Gpcptptpgptpgptpgpgpgpcpap 3');
Chain: B
Engineered: Yes
Other_details: Specific Thap1 Binding Sequence Element Foun Rrm1 Gene Promoter;

Synthetic: Yes

Molecule: Dna (5'- D(Pcpgpcptpgpcpcpcpapcpapcpapapgpc)-3');
Chain: C
Engineered: Yes
Other_details: Specific Thap1 Binding Sequence Element Foun Rrm1 Gene Promoter

Synthetic: Yes
methodSolution NMR
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (693 Kb) [Save to disk]
  • Biological Unit Coordinates (2l1g.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2L1G
  • CSU: Contacts of Structural Units for 2L1G
  • Original NMR restraints for 2L1G from PDB
  • Retrieve 2L1G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L1G from S2C, [Save to disk]
  • View 2L1G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L1G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L1G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l1g_A] [2l1g_B] [2l1g_C] [2l1g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 2L1G: [DM3] [THAP ] by SMART
  • Other resources with information on 2L1G
  • Community annotation for 2L1G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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