2L2R Antimicrobial Protein date Aug 26, 2010
title Helical Hairpin Structure Of A Novel Antimicrobial Peptide E Seeds Of Barnyard Grass (Echinochloa Crus-Galli)
authors S.B.Nolde, N.A.Barinov, T.A.Balashova, A.S.Arseniev, A.A.Vassile E.A.Rogozhin, T.A.Egorov, E.V.Grishin
compound source
Molecule: Antimicrobial Peptide Ecamp1
Chain: A
Organism_scientific: Echinochloa Crus-Galli
Organism_common: Cockspur Grass, Barnyard Grass, Echinochlo Galli (L.) P. Beauv.;
Organism_taxid: 90397
Organ: Seed
methodSolution NMR
note 2L2R is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDisulfide-stabilized Helical Hairpin Structure and Activity of a Novel Antifungal Peptide EcAMP1 from Seeds of Barnyard Grass (Echinochloa crus-galli)., Nolde SB, Vassilevski AA, Rogozhin EA, Barinov NA, Balashova TA, Samsonova OV, Baranov YV, Feofanov AV, Egorov TA, Arseniev AS, Grishin EV, J Biol Chem. 2011 Jul 15;286(28):25145-53. Epub 2011 May 11. PMID:21561864
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (187 Kb) [Save to disk]
  • Biological Unit Coordinates (2l2r.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 2L2R
  • Original NMR restraints for 2L2R from PDB
  • Retrieve 2L2R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L2R from S2C, [Save to disk]
  • View 2L2R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L2R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L2R, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l2r] [2l2r_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2L2R: [Antimicrobial21 ] by SMART
  • Other resources with information on 2L2R
  • Community annotation for 2L2R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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