2L6E NMR Structure of the monomeric mutant C-terminal domain of HIV-1 Capsid in complex with stapled peptide Inhibitor date
authors Bhattacharya, S., Zhang, H., Debnath, A.K., Cowburn, D.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MK8 enzyme
note 2L6E supersedes 2K1C
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of a hydrocarbon stapled peptide inhibitor in complex with monomeric C-terminal domain of HIV-1 capsid., Bhattacharya S, Zhang H, Debnath AK, Cowburn D, J Biol Chem. 2008 Jun 13;283(24):16274-8. Epub 2008 Apr 16. PMID:18417468
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (558 Kb) [Save to disk]
  • Biological Unit Coordinates (2l6e.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 2L6E
  • CSU: Contacts of Structural Units for 2L6E
  • Original NMR restraints for 2L6E from PDB
  • Retrieve 2L6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L6E from S2C, [Save to disk]
    • View 2L6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L6E
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L6E, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l6e_B] [2l6e] [2l6e_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2L6E
  • Community annotation for 2L6E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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