2L75 Transcription Nuclear Protein date Dec 02, 2010
title Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
authors R.E.Mansfield, A.H.Kwan, J.P.Mackay
compound source
Molecule: Chromodomain-Helicase-Dna-Binding Protein 4
Chain: A
Fragment: Phd2 Domain, Unp Residues 446-501
Synonym: Chd-4, Atp-Dependent Helicase Chd4, Mi-2 Autoantig Protein, Mi2-Beta;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Chd4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pgex-2te
Other_details: A Modified Version Of Pgex-2t Containing A H Protease Cleavage Site.;

Molecule: 14-Meric Peptide From 1histone H3.1
Chain: B
Fragment: Unp Residues 2-14
Engineered: Yes
Other_details: H3k9me3

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Other_details: Chemical Synthesized
methodSolution NMR
ligand M3L, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe plant homeodomain (PHD) fingers of CHD4 are histone H3-binding modules with preference for unmodified H3K4 and methylated H3K9., Mansfield RE, Musselman CA, Kwan AH, Garske AL, Davrazou F, Denu JM, Kutateladze TG, Mackay JP, J Biol Chem. 2011 Jan 28. PMID:21278251
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (339 Kb) [Save to disk]
  • Biological Unit Coordinates (2l75.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 2L75
  • CSU: Contacts of Structural Units for 2L75
  • Original NMR restraints for 2L75 from PDB
  • Retrieve 2L75 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L75 from S2C, [Save to disk]
  • View 2L75 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2L75
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L75, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l75_A] [2l75_B] [2l75]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2L75: [PHD ] by SMART
  • Other resources with information on 2L75
  • Community annotation for 2L75 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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