2L89 Protein Binding date Jan 07, 2011
title Solution Structure Of Pdp1 Pwwp Domain Reveals Its Unique Bi Sites For Methylated H4k20 And Dna
authors Y.Qiu, J.Zhang, W.Zhang
compound source
Molecule: Pwwp Domain-Containing Protein 1
Chain: A
Fragment: Pwwp Domain, Residues 45-152
Synonym: Set9-Associated Factor Pdp1
Engineered: Yes
 Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pet22b
methodSolution NMR
Primary referenceSolution structure of Pdp1 PWWP domain reveals its unique binding sites for methylated H4K20 and DNA., Qiu Y, Zhang W, Zhao C, Wang Y, Wang W, Zhang J, Zhang Z, Li G, Shi Y, Tu X, Wu J, Biochem J. 2011 Dec 13. PMID:22150589
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (571 Kb) [Save to disk]
  • Biological Unit Coordinates (2l89.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 2L89
  • Original NMR restraints for 2L89 from PDB
  • Retrieve 2L89 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2L89 from S2C, [Save to disk]
    • View 2L89 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2L89
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2L89, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2l89_A] [2l89]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2L89: [PWWP ] by SMART
    • Other resources with information on 2L89
  • Community annotation for 2L89 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science