2LDF Toxin date May 24, 2011
title Solution Structure Of The Long Sarafotoxin Srtx-M
authors F.Cordier, A.Zorba, M.Hajj, F.Ducancel, D.Servent, M.Delepierre
compound source
Molecule: Sarafotoxin-M
Chain: A
Synonym: Srtx-M
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Atractaspis Microlepidota
Organism_common: Snakes
Organism_taxid: 172021
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePharmacological and structural characterization of long-sarafotoxins, a new family of endothelin-like peptides: Role of the C-terminus extension., Mourier G, Hajj M, Cordier F, Zorba A, Gao X, Coskun T, Herbet A, Marcon E, Beau F, Delepierre M, Ducancel F, Servent D, Biochimie. 2011 Aug 29. PMID:21889567
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2ldf.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 2LDF
  • Original NMR restraints for 2LDF from PDB
  • Retrieve 2LDF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LDF from S2C, [Save to disk]
    • View 2LDF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LDF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LDF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ldf_A] [2ldf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LDF: [END ] by SMART
    • Other resources with information on 2LDF
  • Community annotation for 2LDF at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science