2LJD monophosphorylated (747pY) beta3 integrin cytoplasmic tail under membrane mimetic conditions date
authors Deshmukh, L., Vinogradova, O.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand PTR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTyrosine phosphorylation as a conformational switch: a case study of integrin beta3 cytoplasmic tail., Deshmukh L, Meller N, Alder N, Byzova T, Vinogradova O, J Biol Chem. 2011 Nov 25;286(47):40943-53. doi: 10.1074/jbc.M111.231951. Epub, 2011 Sep 28. PMID:21956114
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (2ljd.pdb1.gz) 16 Kb
  • LPC: Ligand-Protein Contacts for 2LJD
  • CSU: Contacts of Structural Units for 2LJD
  • Original NMR restraints for 2LJD from PDB
  • Retrieve 2LJD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LJD from S2C, [Save to disk]
  • View 2LJD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2LJD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LJD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ljd_A] [2ljd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 2LJD: [Integrin_b_cyt ] by SMART
  • Other resources with information on 2LJD
  • Community annotation for 2LJD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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