2LP1 The solution NMR structure of the transmembrane C-terminal domain of the amyloid precursor protein (C99) date
authors Barrett, P.J., Song, Y., Horn, W.D.Van., Hustedt, E.J., Schafer, J.M., Hadziselimovic, A., Beel, A.J., Sanders, C.R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe amyloid precursor protein has a flexible transmembrane domain and binds cholesterol., Barrett PJ, Song Y, Van Horn WD, Hustedt EJ, Schafer JM, Hadziselimovic A, Beel AJ, Sanders CR, Science. 2012 Jun 1;336(6085):1168-71. PMID:22654059
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (371 Kb) [Save to disk]
  • Biological Unit Coordinates (2lp1.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2LP1
  • Original NMR restraints for 2LP1 from PDB
  • Retrieve 2LP1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LP1 from S2C, [Save to disk]
    • View 2LP1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LP1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LP1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lp1_A] [2lp1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2LP1
  • Community annotation for 2LP1 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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