2LX2 Antifreeze Protein date Aug 12, 2012
title 1h,13c,15n Assignments For An Isoform Of The Type III Antifr Protein From Notched-Fin Eelpout
authors H.Kumeta, K.Ogura, Y.Nishimiya, A.Miura, F.Inagaki, S.Tsuda
compound source
Molecule: Type III Antifreeze Protein Nfeafp11
Chain: A
Engineered: Yes
 Organism_scientific: Zoarces Elongatus
Organism_taxid: 291231
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Vector
Expression_system_vector: Pkk223-3uc
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure note: a defective isoform and its activity-improved variant of a type III antifreeze protein from Zoarces elongates Kner., Kumeta H, Ogura K, Nishimiya Y, Miura A, Inagaki F, Tsuda S, J Biomol NMR. 2013 Feb;55(2):225-30. doi: 10.1007/s10858-012-9703-9. Epub 2013, Jan 4. PMID:23288342
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (387 Kb) [Save to disk]
  • Biological Unit Coordinates (2lx2.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 2LX2
  • Original NMR restraints for 2LX2 from PDB
  • Retrieve 2LX2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LX2 from S2C, [Save to disk]
    • View 2LX2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LX2
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LX2, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lx2] [2lx2_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2LX2
  • Community annotation for 2LX2 at PDBWiki (http://pdbwiki.org)

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