2LZK Dna date Oct 04, 2012
title Nmr Solution Structure Of An N2-Guanine Dna Adduct Derived F Potent Tumorigen Dibenzo[A,L]Pyrene: Intercalation From The Groove With Ruptured Watson-Crick Base Pairing
authors Y.Tang, Z.Liu, S.Ding, C.H.Lin, Y.Cai, F.A.Rodriguez, J.M.Sayer, D. S.Amin, S.Broyde, N.E.Geacintov
compound source
Molecule: Dna (5'-D(Cpcpaptpcpgpcptpapcpc)-3')
Chain: A
Engineered: Yes
 Synthetic: Yes

Molecule: Dna (5'-D(Gpgptpapgpcpgpaptpgpg)-3')
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand 14L enzyme
Primary referenceNuclear Magnetic Resonance Solution Structure of an N(2)-Guanine DNA Adduct Derived from the Potent Tumorigen Dibenzo[a,l]pyrene: Intercalation from the Minor Groove with Ruptured Watson-Crick Base Pairing., Tang Y, Liu Z, Ding S, Lin CH, Cai Y, Rodriguez FA, Sayer JM, Jerina DM, Amin S, Broyde S, Geacintov NE, Biochemistry. 2012 Nov 15. PMID:23121427
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2lzk.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 2LZK
  • CSU: Contacts of Structural Units for 2LZK
  • Original NMR restraints for 2LZK from PDB
  • Retrieve 2LZK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LZK from S2C, [Save to disk]
    • View 2LZK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LZK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LZK, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lzk_A] [2lzk_B] [2lzk]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2LZK
  • Community annotation for 2LZK at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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