2LZT Hydrolase(O-Glycosyl) date Aug 21, 1989
title Refinement Of Triclinic Lysozyme. II. The Method Of Stereochemically Restrained Least-Squares
authors M.Ramanadham, L.C.Sieker, L.H.Jensen
compound source
Molecule: Hen Egg White Lysozyme
Chain: A
Ec: 3.2.1.17
Engineered: Yes
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.283 31.980 34.291 88.53 108.57 111.85
method X-Ray Diffractionresolution 1.97 Å
ligand NO3 enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1KXW, 1LZT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefinement of triclinic lysozyme: II. The method of stereochemically restrained least squares., Ramanadham M, Sieker LC, Jensen LH, Acta Crystallogr B 1990 Feb 1;46 ( Pt 1):63-9. PMID:2302327
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2lzt.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 2LZT
  • CSU: Contacts of Structural Units for 2LZT
  • Likely Quarternary Molecular Structure file(s) for 2LZT
  • Structure Factors (89 Kb)
  • Retrieve 2LZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2LZT from S2C, [Save to disk]
  • Re-refined 2lzt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2LZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2LZT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2LZT, from MSDmotif at EBI
  • Genome occurence of 2LZT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d2lzt__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2lzt_A] [2lzt]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 2LZT: [LYZ1 ] by SMART
    • Other resources with information on 2LZT
  • Community annotation for 2LZT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 2LZT from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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