2M4J Protein Fibril date Feb 05, 2013
title 40-Residue Beta-Amyloid Fibril Derived From Alzheimer'S Dise
authors J.Lu, W.Qiang, S.C.Meredith, W.Yau, C.D.Schweiters, R.Tycko
compound source
Molecule: Amyloid Beta A4 Protein
Chain: A, B, C, D, E, F, G, H, I
Fragment: Unp Residues 672-711
Synonym: Abpp, Appi, App, Alzheimer Disease Amyloid Protein Vascular Amyloid Peptide, Cvap, Prea4, Protease Nexin-II, P App, Soluble App-Alpha, S-App-Alpha, Soluble App-Beta, S-Ap C99, Beta-Amyloid Protein 42, Beta-App42, Beta-Amyloid Prot Beta-App40, C83, P3(42), P3(40), C80, Gamma-Secretase C-Ter Fragment 59, Amyloid Intracellular Domain 59, Aicd-59, Aid( Gamma-Ctf(59), Gamma-Secretase C-Terminal Fragment 57, Amyl Intracellular Domain 57, Aicd-57, Aid(57), Gamma-Ctf(57), G Secretase C-Terminal Fragment 50, Amyloid Intracellular Dom Aicd-50, Aid(50), Gamma-Ctf(50), C31
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolid-State NMR
note 2M4J (Molecule of the Month:pdb189)
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, I, G


Primary referenceMolecular Structure of beta-Amyloid Fibrils in Alzheimer's Disease Brain Tissue., Lu JX, Qiang W, Yau WM, Schwieters CD, Meredith SC, Tycko R, Cell. 2013 Sep 12;154(6):1257-68. doi: 10.1016/j.cell.2013.08.035. PMID:24034249
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1755 Kb) [Save to disk]
  • Biological Unit Coordinates (2m4j.pdb1.gz) 88 Kb
  • CSU: Contacts of Structural Units for 2M4J
  • Original NMR restraints for 2M4J from PDB
  • Retrieve 2M4J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M4J from S2C, [Save to disk]
    • View 2M4J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2M4J
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2M4J, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m4j_E] [2m4j_G] [2m4j_B] [2m4j_C] [2m4j_H] [2m4j_F] [2m4j_I] [2m4j] [2m4j_A] [2m4j_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2M4J
  • Community annotation for 2M4J at PDBWiki (http://pdbwiki.org)

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