2M7I Antibiotic date Apr 24, 2013
title Solution Structure Of A Beta-Hairpin Peptidomimetic Antibiot Targets Lptd In Pseudomonas Sp.
authors K.Moehle, J.Schmidt, J.Robinson
compound source
Molecule: Beta-Hairpin Peptidomimetic Antibiotic Twl(Dab)(O Rw(Orn)(Dab)Ak(Dpr)P;
Chain: A
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand DAB, DLY, DPR, ORN enzyme
Primary referenceStructural studies of beta-hairpin peptidomimetic antibiotics that target LptD in Pseudomonas sp., Schmidt J, Patora-Komisarska K, Moehle K, Obrecht D, Robinson JA, Bioorg Med Chem. 2013 Sep 15;21(18):5806-10. doi: 10.1016/j.bmc.2013.07.013. Epub, 2013 Jul 17. PMID:23932450
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (2m7i.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 2M7I
  • CSU: Contacts of Structural Units for 2M7I
  • Original NMR restraints for 2M7I from PDB
  • Retrieve 2M7I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M7I from S2C, [Save to disk]
  • View 2M7I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M7I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2M7I, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m7i] [2m7i_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2M7I
  • Community annotation for 2M7I at PDBWiki (http://pdbwiki.org)

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