2M8O Viral Protein date May 23, 2013
title Nmr Assignment And Structure Of A Peptide Derived From The M Proximal External Region Of Hiv-1 Gp41 In Dpc
authors S.Serrano, N.Huarte, J.L.Nieva, M.Jimenez
compound source
Molecule: Transmembrane Protein Gp41
Chain: A
Fragment: Unp Residues 656-683
Synonym: Tm, Glycoprotein 41, Gp41
Engineered: Yes
Synthetic: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1
Organism_common: Hiv-1
Organism_taxid: 11702
methodSolution NMR
Primary referenceStructure and Immunogenicity of a Peptide Vaccine Including the Complete HIV-1 gp41 2F5 Epitope. Implications for Antibody Recognition Mechanism and Immunogen Design., Serrano S, Araujo A, Apellaniz B, Bryson S, Carravilla P, De la Arada I, Huarte N, Rujas E, Pai EF, Arrondo JL, Domene C, Jimenez MA, Nieva JL, J Biol Chem. 2014 Jan 15. PMID:24429284
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (2m8o.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 2M8O
  • Original NMR restraints for 2M8O from PDB
  • Retrieve 2M8O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2M8O from S2C, [Save to disk]
  • View 2M8O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2M8O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2M8O, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2m8o_A] [2m8o]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2M8O
  • Community annotation for 2M8O at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science